Basic Information
Locus ID:
gene:TRIDC5BG021650
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Domain of unknown function (DUF3337)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 229416477 | 229424694 | + | gene:TRIDC5BG021650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 78,632.39 Da | 38.19 | 80.55 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 32 | 363 | 2.36829E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 241 | 8.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 34 | 67 | 0.089 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 283 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 0.063 | IPR001680 |
| Pfam | PF11816 | Domain of unknown function (DUF3337) | 601 | 719 | 1.9E-10 | IPR021772 |
| Pfam | PF00400 | WD domain, G-beta repeat | 115 | 154 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 79 | 110 | 0.13 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 445 | 2.99E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 207 | 471 | 6.3E-38 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 205 | 8.5E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 114 | 154 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 364 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 19 | 68 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 325 | 1.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 241 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 73 | 110 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 283 | 2.0E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 251 | 284 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 292 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 250 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 156 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 241 | 11.312864 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 270 | 284 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 97 | 111 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 270 | 284 | 5.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 551 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05090.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1Cul4mediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence. | 0 |
| RefSeq | XP_037440206.1 | WD repeat-containing protein 48-like isoform X1 [Triticum dicoccoides] | 0 |
| Q8TAF3 | WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LIW5 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG021650.