Basic Information
Locus ID:
gene:TRIDC5BG019640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 190788567 | 190816322 | + | gene:TRIDC5BG019640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 132,295.77 Da | 42.95 | 77.10 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 211 | 540 | 4.40982E-168 | - |
| CDD | cd00121 | MATH | 70 | 186 | 2.05424E-36 | IPR002083 |
| Pfam | PF00917 | MATH domain | 75 | 195 | 4.2E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 639 | 891 | 1.8E-73 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 213 | 535 | 1.3E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 901 | 1110 | 4.9E-55 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 66 | 201 | 1.64E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 208 | 565 | 3.53E-96 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 699 | 816 | 1.5E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 66 | 209 | 4.9E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 210 | 539 | 1.4E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 817 | 914 | 6.9E-27 | - |
| SMART | SM00061 | math_3 | 73 | 174 | 5.3E-22 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 68 | 193 | 38.494148 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 213 | 538 | 40.818539 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 454 | 471 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 214 | 229 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| Coils | Coil | Coil | 554 | 574 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_037440078.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X4 [Triticum dicoccoides] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LIC1 | ubiquitinyl hydrolase 1 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG019640.