Basic Information
Locus ID:
gene:TRIDC5BG019230
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 184734643 | 184746166 | - | gene:TRIDC5BG019230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 91,267.60 Da | 38.54 | 107.07 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 53 | 100 | 1.3728E-16 | - |
| Pfam | PF04564 | U-box domain | 51 | 125 | 3.7E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 129 | 777 | 2.19E-32 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 39 | 130 | 2.24E-24 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 333 | 2.6E-20 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 506 | 1.2E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 592 | 824 | 4.7E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 133 | 3.6E-24 | IPR013083 |
| SMART | SM00185 | arm_5 | 327 | 366 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 610 | 651 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 286 | 326 | 55.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 159 | 199 | 97.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 738 | 779 | 81.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 692 | 733 | 8.7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 52 | 120 | 5.5E-26 | IPR003613 |
| SMART | SM00185 | arm_5 | 367 | 412 | 58.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 201 | 241 | 22.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 48 | 127 | 29.811775 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_037440045.1 | U-box domain-containing protein 44-like [Triticum dicoccoides] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | N1R5B0 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG019230.