Basic Information
Locus ID:
gene:TRIDC5BG017340
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 144890489 | 144903063 | + | gene:TRIDC5BG017340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 79,626.81 Da | 51.84 | 59.40 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15489 | PHD_SF | 34 | 87 | 0.00147767 | - |
| Pfam | PF00628 | PHD-finger | 172 | 227 | 2.4E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 30 | 90 | 6.87E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 170 | 229 | 7.3E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 79 | 140 | 3.77E-10 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 229 | 8.1E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 144 | 1.7E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 172 | 227 | 3.6E-8 | IPR001965 |
| SMART | SM00249 | PHD_3 | 34 | 88 | 1.3 | IPR001965 |
| SMART | SM00249 | PHD_3 | 89 | 135 | 7.5E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 32 | 90 | 9.2586 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 170 | 229 | 9.1073 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 647 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 467 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08020.1 | PHD finger family protein. | 0 |
| RefSeq | XP_037439920.1 | uncharacterized protein LOC119307926 [Triticum dicoccoides] | 0 |
| Q8BRH4 | Histone-lysine N-methyltransferase 2C OS=Mus musculus OX=10090 GN=Kmt2c PE=1 SV=2 | 0 | |
| TrEMBL | A0A453K0Q1 | PHD-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG017340.