Basic Information
Locus ID:
gene:TRIDC5BG014370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 116536320 | 116545282 | + | gene:TRIDC5BG014370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 59,324.39 Da | 47.38 | 96.54 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 127 | 169 | 5.12612E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 248 | 287 | 6.3E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 332 | 369 | 2.3E-6 | IPR000225 |
| Pfam | PF04564 | U-box domain | 123 | 193 | 4.6E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 218 | 509 | 1.51E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 198 | 1.32E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 341 | 497 | 1.4E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 218 | 340 | 2.9E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 197 | 2.2E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 248 | 288 | 1.6E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 412 | 452 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 330 | 370 | 1.1 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 126 | 189 | 7.1E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 289 | 329 | 0.57 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 259 | 301 | 13.002399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 122 | 196 | 43.902977 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 546 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_037439711.1 | protein spotted leaf 11-like [Triticum dicoccoides] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LHN3 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG014370.