Basic Information
Locus ID:
gene:TRIDC5BG013370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 108194667 | 108200587 | + | gene:TRIDC5BG013370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 66,394.54 Da | 51.49 | 85.24 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 555 | 1.04629E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 343 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 512 | 0.0019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 521 | 555 | 2.8E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.01 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 5.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 555 | 5.76E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 588 | 6.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 519 | 1.2E-59 | IPR015943 |
| SMART | SM00668 | ctlh | 94 | 151 | 1.6E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 0.43 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 1.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 467 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 9.9E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 12.313033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 12.077406 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 10.932423 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.664682 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 10.891048 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 597 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037439639.1 | WD repeat-containing protein 26 homolog [Triticum dicoccoides] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LHF2 | WD repeat-containing protein 26-like OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG013370.