Basic Information
Locus ID:
gene:TRIDC5BG011550
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 88754188 | 88755775 | + | gene:TRIDC5BG011550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 48,131.45 Da | 41.71 | 75.47 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 83 | 414 | 4.01379E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 329 | 359 | 0.26 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 263 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 221 | 0.0016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 413 | 1.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 80 | 418 | 2.93E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 274 | 442 | 1.4E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 273 | 7.5E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 67 | 160 | 5.0E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 323 | 360 | 0.053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 109 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 414 | 7.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 148 | 0.63 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 227 | 8.57106 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 359 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 263 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 373 | 423 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 359 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 11.544415 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 347 | 361 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 401 | 415 | 1.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49450.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037439532.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LH52 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG011550.