Basic Information
Locus ID:
gene:TRIDC5BG011100
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 84298201 | 84306563 | - | gene:TRIDC5BG011100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 58,396.50 Da | 60.14 | 70.91 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 150 | 202 | 4.01765E-28 | - |
| Pfam | PF02809 | Ubiquitin interaction motif | 99 | 112 | 0.15 | IPR003903 |
| Pfam | PF12315 | Protein DA1 | 299 | 510 | 1.8E-98 | IPR022087 |
| Pfam | PF00412 | LIM domain | 150 | 204 | 5.1E-12 | IPR001781 |
| Pfam | PF02809 | Ubiquitin interaction motif | 71 | 84 | 0.0042 | IPR003903 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 175 | 3.06E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 176 | 230 | 1.25E-10 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 137 | 208 | 9.6E-17 | - |
| SMART | SM00132 | lim_4 | 149 | 201 | 5.5E-17 | IPR001781 |
| SMART | SM00726 | uim | 99 | 118 | 0.0081 | IPR003903 |
| SMART | SM00726 | uim | 68 | 87 | 0.07 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 68 | 87 | 9.247869 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 99 | 118 | 10.475372 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 148 | 208 | 13.107699 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 150 | 184 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 138 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_037439509.1 | protein DA1-related 1-like [Triticum dicoccoides] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6LGZ6 | LIM zinc-binding domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG011100.