Basic Information
Locus ID:
gene:TRIDC5BG009220
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 64997040 | 65003574 | + | gene:TRIDC5BG009220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 87,919.09 Da | 36.60 | 86.76 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 314 | 0.0023 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 481 | 729 | 9.89E-19 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 14 | 417 | 1.71E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 151 | 438 | 3.4E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 740 | 9.9E-18 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 144 | 2.7E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 37 | 86 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 247 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 532 | 568 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 315 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 612 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 515 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 246 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 324 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 320 | 9.731054 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18900.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037439393.1 | WD repeat-containing protein 75-like [Triticum dicoccoides] | 0 |
| O13878 | U3 small nucleolar RNA-associated protein 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp17 PE=3 SV=3 | 0 | |
| TrEMBL | A0A3B6LGK5 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG009220.