Basic Information
Locus ID:
gene:TRIDC5BG007670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 51088862 | 51092969 | + | gene:TRIDC5BG007670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 42,695.17 Da | 43.55 | 86.52 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 246 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 289 | 318 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 165 | 1.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 123 | 3.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 354 | 1.54E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 386 | 1.1E-104 | IPR015943 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 74 | 123 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 208 | 246 | 0.59 | IPR001680 |
| SMART | SM00320 | WD40_4 | 26 | 64 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 165 | 2.3E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 133 | 174 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 91 | 126 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 32 | 69 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 32 | 73 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 133 | 165 | 10.15287 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 91 | 132 | 12.947979 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 110 | 124 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 110 | 124 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 233 | 247 | 3.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 152 | 166 | 3.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05410.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a nucleolar protein with seven WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis. YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis. | 0 |
| RefSeq | XP_044386781.1 | U3 snoRNP-associated protein-like YAOH [Triticum aestivum] | 0 |
| Q75LV5 | U3 snoRNP-associated protein-like YAOH OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0625900 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453JNA0 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG007670.