Basic Information
Locus ID:
gene:TRIDC5BG002140
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Bromodomain and WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 11902832 | 11918228 | - | gene:TRIDC5BG002140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 187,308.55 Da | 49.79 | 67.03 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 240 | 619 | 5.99963E-51 | - |
| CDD | cd05529 | Bromo_WDR9_I_like | 1548 | 1680 | 2.83387E-40 | - |
| Pfam | PF00439 | Bromodomain | 1621 | 1664 | 3.3E-5 | IPR001487 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 362 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 281 | 316 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 8.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 427 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 236 | 659 | 1.33E-66 | IPR036322 |
| SUPERFAMILY | SSF47370 | Bromodomain | 1622 | 1675 | 1.57E-6 | IPR036427 |
| Gene3D | G3DSA:2.130.10.10 | - | 391 | 461 | 2.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 390 | 9.1E-39 | IPR015943 |
| Gene3D | G3DSA:1.20.920.10 | - | 1611 | 1680 | 3.0E-6 | IPR036427 |
| Gene3D | G3DSA:2.130.10.10 | - | 468 | 676 | 2.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 537 | 576 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 362 | 2.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 8.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 1.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 4.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 439 | 505 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 391 | 427 | 0.0033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 427 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 327 | 362 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 284 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 285 | 326 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 278 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 327 | 362 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 285 | 318 | 9.599237 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 606 | 620 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1323 | 1366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1275 | 1290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1235 | 1250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1203 | 1217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1323 | 1337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1062 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 809 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1218 | 1234 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49430.1 | WD40/YVTN repeat-like-containing domain;Bromodomain. | 0 |
| RefSeq | XP_037439037.1 | bromodomain and WD repeat-containing protein 1-like [Triticum dicoccoides] | 0 |
| Q8WWQ0 | PH-interacting protein OS=Homo sapiens OX=9606 GN=PHIP PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6LDG7 | Bromo domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG002140.