Basic Information
Locus ID:
gene:TRIDC5BG001450
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5B | 7915258 | 7916895 | - | gene:TRIDC5BG001450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 24,796.67 Da | 47.98 | 68.46 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 23 | 67 | 9.28885E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 24 | 70 | 1.3E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 78 | 1.28E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 83 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 65 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 66 | 13.344952 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 111 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037438994.1 | E3 ubiquitin-protein ligase RNF5-like [Triticum dicoccoides] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6LEU6 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5BG001450.