Basic Information
Locus ID:
gene:TRIDC5AG078410
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 697782128 | 697788818 | + | gene:TRIDC5AG078410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 146,865.98 Da | 40.92 | 89.19 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 261 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 15 | 594 | 1.04E-30 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 462 | 1064 | 1.05E-13 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1047 | 1285 | 2.17E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 279 | 500 | 2.4E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 198 | 1.5E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 199 | 278 | 1.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 512 | 811 | 9.9E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1032 | 1296 | 2.0E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 553 | 593 | 98.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 318 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 360 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 536 | 66.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1025 | 1064 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 7.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1166 | 1216 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 43 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1240 | 1280 | 85.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 103 | 142 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 761 | 809 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 230 | 261 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 261 | 12.045688 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1044 | 1065 | 9.639578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1051 | 1065 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01860.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037437472.1 | uncharacterized protein LOC119304396 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6KSL0 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG078410.