halophFGD

Basic Information

Locus ID: gene:TRIDC5AG076630

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
5A	689478294	689486024	-	gene:TRIDC5AG076630

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.59	140,625.61 Da	35.53	88.03	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	55	363	4.01844E-77	-
Pfam	PF00400	WD domain, G-beta repeat	287	322	1.2E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	244	277	8.3E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	172	209	1.6E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	130	167	4.3E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	90	125	1.1E-4	IPR001680
Pfam	PF04053	Coatomer WD associated region	393	814	1.9E-128	IPR006692
Pfam	PF06957	Coatomer (COPI) alpha subunit C-terminus	861	1264	1.6E-172	IPR010714
SUPERFAMILY	SSF50978	WD40 repeat-like	47	361	5.5E-75	IPR036322
SUPERFAMILY	SSF51004	C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase	282	593	3.14E-14	IPR011048
Gene3D	G3DSA:2.130.10.10	-	46	365	7.3E-127	IPR015943
Gene3D	G3DSA:1.25.40.470	-	686	858	6.9E-60	-
SMART	SM00320	WD40_4	170	209	4.5E-11	IPR001680
SMART	SM00320	WD40_4	86	125	1.3E-6	IPR001680
SMART	SM00320	WD40_4	128	167	2.8E-10	IPR001680
SMART	SM00320	WD40_4	325	363	72.0	IPR001680
SMART	SM00320	WD40_4	283	322	3.1E-6	IPR001680
SMART	SM00320	WD40_4	239	278	5.5E-6	IPR001680
SMART	SM00320	WD40_4	44	83	0.63	IPR001680
PIRSF	PIRSF003354	Alpha-COP	45	1260	0.0	IPR016391
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	290	331	14.919653	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	177	210	15.320672	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	135	176	14.217871	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	290	322	11.81377	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	135	167	11.286501	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	246	280	10.574686	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	177	210	12.631039	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	93	134	13.449252	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	246	287	12.981398	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	93	128	10.469233	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	196	210	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	196	210	4.7E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	309	323	4.7E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	154	168	4.7E-7	IPR020472

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity) GO:0005515 (protein binding)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K05236 (coatomer subunit alpha)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62020.1	Coatomer, alpha subunit.
RefSeq	XP_037437382.1	coatomer subunit alpha-3-like [Triticum dicoccoides]
Swiss-Prot	Q0J3D9	Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1
TrEMBL	A0A3B6KUK5	Coatomer subunit alpha OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC5AG076630.