Basic Information
Locus ID:
gene:TRIDC5AG073420
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 671219888 | 671224062 | - | gene:TRIDC5AG073420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 54,646.43 Da | 45.88 | 69.24 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 209 | 485 | 1.21409E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 355 | 3.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 400 | 0.0034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 485 | 1.9E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 239 | 296 | 1.2E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 188 | 508 | 4.21E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 182 | 490 | 1.9E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 232 | 272 | 0.0034 | IPR001680 |
| SMART | SM00320 | WD40_4 | 358 | 400 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 485 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 355 | 9.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 443 | 460.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 188 | 229 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 312 | 0.27 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 323 | 364 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 486 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 323 | 355 | 11.022865 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 453 | 486 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 281 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_037437191.1 | protein FIZZY-RELATED 2-like [Triticum dicoccoides] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QKU3 | ANAPC4_WD40 domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG073420.