Basic Information
Locus ID:
gene:TRIDC5AG073190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 669553744 | 669559691 | - | gene:TRIDC5AG073190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 74,233.41 Da | 53.89 | 73.70 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 14 | 38 | 2.73148E-6 | - |
| CDD | cd01466 | vWA_C3HC4_type | 168 | 345 | 5.70812E-53 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 169 | 355 | 6.6E-23 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 525 | 634 | 3.1E-16 | IPR032838 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 48 | 4.08E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 164 | 358 | 2.62E-33 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 53 | 1.4E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 169 | 359 | 4.7E-46 | IPR036465 |
| SMART | SM00327 | VWA_4 | 167 | 354 | 4.6E-25 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 169 | 365 | 16.293266 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 692 | - | - |
| Coils | Coil | Coil | 491 | 518 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037437170.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KRR1 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG073190.