Basic Information
Locus ID:
gene:TRIDC5AG073170
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 669476943 | 669481280 | - | gene:TRIDC5AG073170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 77,556.62 Da | 51.29 | 78.57 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 252 | 422 | 5.69263E-54 | - |
| Pfam | PF17123 | RING-like zinc finger | 80 | 109 | 4.8E-9 | IPR001841 |
| Pfam | PF00092 | von Willebrand factor type A domain | 253 | 429 | 4.8E-24 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 598 | 671 | 9.8E-20 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 249 | 435 | 9.6E-33 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 130 | 4.95E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 130 | 5.1E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 253 | 437 | 2.5E-42 | IPR036465 |
| SMART | SM00327 | VWA_4 | 251 | 441 | 6.2E-25 | IPR002035 |
| SMART | SM00184 | ring_2 | 80 | 123 | 5.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 124 | 11.574592 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 253 | 436 | 16.997686 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037437169.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KTP2 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG073170.