Basic Information
Locus ID:
gene:TRIDC5AG072800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Prp19/Pso4-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 666667946 | 666674554 | + | gene:TRIDC5AG072800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 62,215.93 Da | 34.98 | 83.28 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 260 | 550 | 1.77572E-55 | - |
| CDD | cd16656 | RING-Ubox_PRP19 | 39 | 91 | 1.12609E-26 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 550 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 373 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 327 | 1.8E-6 | IPR001680 |
| Pfam | PF08606 | Prp19/Pso4-like | 103 | 167 | 1.8E-30 | IPR013915 |
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 461 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 558 | 1.53E-61 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 38 | 90 | 3.09E-13 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 236 | 552 | 1.5E-84 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 96 | 2.8E-23 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 37 | 103 | 1.2E-21 | IPR003613 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 286 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 461 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 551 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 464 | 503 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 417 | 0.018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 289 | 328 | 2.8E-9 | IPR001680 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 33 | 107 | 22.009869 | IPR003613 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 385 | 426 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 470 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 296 | 328 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 385 | 420 | 8.861059 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 296 | 328 | 12.341042 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 341 | 382 | 9.071468 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04510.1 | MOS4-associated complex 3A. Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_044983137.1 | pre-mRNA-processing factor 19-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453J566 | Pre-mRNA-processing factor 19 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG072800.