Basic Information
Locus ID:
gene:TRIDC5AG069200
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 649364850 | 649372453 | - | gene:TRIDC5AG069200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 33,353.99 Da | 33.55 | 72.89 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 85 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 94 | 132 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 244 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 195 | 0.0059 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 37 | 0.0092 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 290 | 5.5E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 305 | 7.9E-104 | IPR015943 |
| SMART | SM00320 | WD40_4 | 139 | 195 | 0.0081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 245 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 39 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 85 | 7.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 133 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 182 | 204 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 85 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 244 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 244 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 85 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 7 | 37 | 8.603614 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 72 | 86 | 8.9E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037436917.1 | protein transport protein SEC13 homolog B-like [Triticum dicoccoides] | 0 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 0 | |
| TrEMBL | M7ZPN1 | Protein SEC13-like protein OS=Triticum urartu OX=4572 GN=TRIUR3_32801 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG069200.