Basic Information
Locus ID:
gene:TRIDC5AG067240
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 638992195 | 638992830 | + | gene:TRIDC5AG067240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 21,371.27 Da | 50.34 | 90.28 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 109 | 152 | 1.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 155 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 157 | 2.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 110 | 151 | 9.1E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 109 | 152 | 0.0099 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 152 | 12.902362 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037431640.1 | E3 ubiquitin-protein ligase EL5-like [Triticum dicoccoides] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KPS9 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG067240.