Basic Information
Locus ID:
gene:TRIDC5AG063830
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 619030785 | 619034600 | - | gene:TRIDC5AG063830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 30,676.54 Da | 50.88 | 59.30 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 71 | 209 | 7.09392E-60 | - |
| Pfam | PF00628 | PHD-finger | 193 | 240 | 6.1E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 74 | 188 | 1.4E-23 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 182 | 243 | 1.2E-17 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 259 | 5.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 48 | 186 | 1.3E-27 | IPR043151 |
| SMART | SM00249 | PHD_3 | 193 | 240 | 1.1E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 72 | 189 | 4.6E-40 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 191 | 242 | 9.116199 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 72 | 189 | 22.442148 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 194 | 239 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_037436617.1 | chromatin remodeling protein EBS-like isoform X1 [Triticum dicoccoides] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A453M3U6 | PHD-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG063830.