halophFGD

Basic Information

Locus ID: gene:TRIDC5AG063040

Species & Taxonomic ID: Triticum dicoccoides & 85692

Genome Assembly: GCF_002162155.2

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
5A	615003490	615005637	-	gene:TRIDC5AG063040

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.71	61,227.13 Da	46.36	74.79	-0.65

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	249	274	0.23	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	370	405	0.0057	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	246	543	6.87E-44	IPR036322
Gene3D	G3DSA:2.130.10.10	-	225	544	2.1E-106	IPR015943
SMART	SM00320	WD40_4	500	542	37.0	IPR001680
SMART	SM00320	WD40_4	408	448	2.1	IPR001680
SMART	SM00320	WD40_4	367	405	9.5E-6	IPR001680
SMART	SM00320	WD40_4	235	275	0.63	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	373	414	10.742378	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	1	72	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14553 (U3 small nucleolar RNA-associated protein 18)

Pathway:

ko03008 (Ribosome biogenesis in eukaryotes) map03008 (Ribosome biogenesis in eukaryotes)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G14050.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_037436565.1	U3 small nucleolar RNA-associated protein 18 homolog [Triticum dicoccoides]
Swiss-Prot	Q9FMU5	U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g14050 PE=1 SV=1
TrEMBL	A0A3B6KPD0	WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

No orthogroup found for gene:TRIDC5AG063040.