Basic Information
Locus ID:
gene:TRIDC5AG059980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 597737305 | 597738701 | + | gene:TRIDC5AG059980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 22,827.78 Da | 60.35 | 56.70 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 103 | 163 | 2.4E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 98 | 1.77E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 208 | 1.01E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 168 | 3.53E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 161 | 209 | 3.5E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 102 | 5.8E-16 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 89 | 163 | 7.1E-8 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 13 | 209 | 20.333294 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037433092.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A453LYH7 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG059980.