Basic Information
Locus ID:
gene:TRIDC5AG059160
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 593437342 | 593460736 | + | gene:TRIDC5AG059160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 97,004.52 Da | 32.59 | 98.50 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 560 | 830 | 3.4E-46 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 128 | 187 | 1.4E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 394 | 414 | 0.46 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 223 | 484 | 4.08E-54 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 2 | 308 | 3.14E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 552 | 830 | 8.09E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 526 | 636 | 2.3E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 488 | 1.8E-85 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 91 | 2.1E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 92 | 194 | 3.9E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 637 | 846 | 2.4E-61 | - |
| SMART | SM00369 | LRR_typ_2 | 224 | 246 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 5 | 29 | 28.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 559 | 807 | 3.6E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 439 | 462 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 53 | 77 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 173 | 8.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 367 | 391 | 380.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 559 | 833 | 37.21978 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 7 | 28 | 7.026593 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 681 | 693 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 896 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_037436327.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Triticum dicoccoides] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | M8AR77 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Triticum urartu OX=4572 GN=TRIUR3_29720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG059160.