Basic Information
Locus ID:
gene:TRIDC5AG057120
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
cleavage stimulation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 583808070 | 583812315 | + | gene:TRIDC5AG057120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 38,132.32 Da | 35.57 | 69.94 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 35 | 347 | 2.53197E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 164 | 0.041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 187 | 215 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 127 | 4.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 36 | 70 | 2.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 347 | 2.82E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 347 | 4.2E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 262 | 304 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 347 | 0.0024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 259 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 171 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 32 | 71 | 3.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 215 | 7.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 39 | 80 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 39 | 73 | 8.755605 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 183 | 215 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 136 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 129 | 8.676514 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 347 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 347 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 268 | 9.940341 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 215 | 11.510997 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 246 | 260 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 334 | 347 | 6.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 6.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 6.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60940.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037436169.1 | cleavage stimulation factor subunit 50-like [Triticum dicoccoides] | 0 |
| Q8L4J2 | Cleavage stimulation factor subunit 50 OS=Arabidopsis thaliana OX=3702 GN=CSTF50 PE=1 SV=1 | 0 | |
| TrEMBL | Q8SAE2 | Cleavage stimulation factor 50 kDa subunit OS=Triticum monococcum OX=4568 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG057120.