Basic Information
Locus ID:
gene:TRIDC5AG056320
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 577769998 | 577774024 | - | gene:TRIDC5AG056320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 42,911.40 Da | 36.84 | 93.34 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 23 | 53 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 161 | 196 | 2.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 143 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 289 | 7.33E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 21 | 293 | 1.4E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 8 | 53 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 92 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 145 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 196 | 4.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 205 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 21 | 56 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 196 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 21 | 62 | 13.516088 | IPR001680 |
| Hamap | MF_03056 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. | 1 | 387 | 23.592346 | IPR028884 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03110.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037436103.1 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like [Triticum dicoccoides] | 0 |
| A4IGH4 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 OS=Danio rerio OX=7955 GN=wdr4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6KPH0 | tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG056320.