Basic Information
Locus ID:
gene:TRIDC5AG056260
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Autophagy protein 16 (ATG16)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 577520497 | 577523803 | + | gene:TRIDC5AG056260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 53,219.73 Da | 35.79 | 86.00 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 196 | 488 | 9.80933E-58 | - |
| Pfam | PF08614 | Autophagy protein 16 (ATG16) | 23 | 142 | 1.7E-10 | IPR013923 |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 448 | 0.0064 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 232 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 278 | 317 | 5.3E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 483 | 5.8E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 339 | 422 | 3.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 338 | 7.5E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 423 | 488 | 3.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 317 | 6.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 488 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 448 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 357 | 9.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 398 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 321 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 236 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 326 | 12.079106 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 304 | 318 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 435 | 449 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 304 | 318 | 2.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 219 | 233 | 2.0E-7 | IPR020472 |
| Coils | Coil | Coil | 43 | 129 | - | - |
| Coils | Coil | Coil | 131 | 158 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50230.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048531758.1 | autophagy-related protein 16 [Triticum urartu] | 0 |
| Q6NNP0 | Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1 | 0 | |
| TrEMBL | M8A6R7 | Protein tipD OS=Triticum urartu OX=4572 GN=TRIUR3_15505 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG056260.