Basic Information
Locus ID:
gene:TRIDC5AG055960
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin A-52 residue ribosomal protein fusion product 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 575624319 | 575626915 | + | gene:TRIDC5AG055960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 18,232.55 Da | 33.89 | 93.51 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 69 | 118 | 1.13464E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 53 | 117 | 8.9E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 46 | 2.5E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 49 | 3.22E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 51 | 119 | 4.6E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 51 | 138 | 3.1E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 50 | 5.4E-20 | - |
| SMART | SM00213 | ubq_7 | 1 | 44 | 15.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 51 | 121 | 4.4E-6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 51 | 118 | 14.447187 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 48 | 18.192556 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 4 | 24 | 3.3E-16 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 25 | 46 | 3.3E-16 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_048527912.1 | polyubiquitin 11-like [Triticum urartu] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7QIH7 | Polyubiquitin OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG055960.