Basic Information
Locus ID:
gene:TRIDC5AG055900
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 575517069 | 575518899 | - | gene:TRIDC5AG055900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 36,819.42 Da | 56.28 | 102.88 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 228 | 297 | 5.8E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 18 | 75 | 2.8E-8 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 150 | 210 | 2.4E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 76 | 143 | 2.8E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 74 | 143 | 7.6E-21 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 19 | 74 | 9.91E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 228 | 301 | 4.56E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 143 | 209 | 8.08E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 224 | 295 | 1.1E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 15 | 74 | 2.4E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 148 | 216 | 2.3E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 75 | 143 | 3.4E-26 | - |
| SMART | SM00213 | ubq_7 | 226 | 298 | 2.0E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 148 | 219 | 3.0E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 17 | 73 | 1.3 | IPR000626 |
| SMART | SM00213 | ubq_7 | 74 | 145 | 1.8E-17 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 74 | 143 | 20.39187 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 226 | 302 | 13.641498 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 40 | 75 | 9.112214 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 148 | 208 | 18.040127 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 100 | 125 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 126 | 147 | 3.3E-14 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 105 | 125 | 3.3E-14 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 84 | 104 | 3.3E-14 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_040245955.1 | polyubiquitin 11-like [Aegilops tauschii subsp. strangulata] | 0 |
| P0CH27 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Trypanosoma cruzi OX=5693 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LT06 | Polyubiquitin OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG055900.