Basic Information
Locus ID:
gene:TRIDC5AG055640
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Region in Clathrin and VPS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 573024032 | 573036928 | - | gene:TRIDC5AG055640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 112,267.92 Da | 42.80 | 88.38 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16462 | RING-H2_Pep3p_like | 845 | 963 | 4.36306E-15 | - |
| Pfam | PF00637 | Region in Clathrin and VPS | 609 | 756 | 3.9E-11 | IPR000547 |
| Pfam | PF05131 | Pep3/Vps18/deep orange family | 255 | 406 | 3.2E-38 | IPR007810 |
| SUPERFAMILY | SSF57850 | RING/U-box | 840 | 899 | 7.85E-7 | - |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 600 | 760 | 24.061287 | IPR000547 |
| Coils | Coil | Coil | 796 | 830 | - | - |
| Coils | Coil | Coil | 716 | 736 | - | - |
| Coils | Coil | Coil | 760 | 780 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12470.1 | zinc ion binding. | 0 |
| RefSeq | XP_037436066.1 | vacuolar sorting protein 18-like [Triticum dicoccoides] | 0 |
| F4IDS7 | Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KMG9 | Pep3_Vps18 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG055640.