Basic Information
Locus ID:
gene:TRIDC5AG055460
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 571600830 | 571602453 | + | gene:TRIDC5AG055460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 52,885.54 Da | 47.43 | 73.60 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 125 | 456 | 4.93623E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 233 | 262 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 304 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 400 | 455 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 361 | 392 | 5.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 117 | 459 | 8.37E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 98 | 203 | 4.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 311 | 7.3E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 472 | 1.7E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 356 | 393 | 0.0053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 304 | 7.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 352 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 114 | 151 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 189 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 456 | 2.3E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 363 | 392 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 272 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 304 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 304 | 8.623787 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 443 | 457 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 250 | 264 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 291 | 305 | 1.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 65 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18950.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037431433.1 | protein JINGUBANG-like [Triticum dicoccoides] | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KPU2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG055460.