Basic Information
Locus ID:
gene:TRIDC5AG054190
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 565200249 | 565208639 | + | gene:TRIDC5AG054190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 41,793.49 Da | 47.02 | 74.69 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14482 | SPX_BAH1-like | 29 | 187 | 1.25483E-99 | - |
| Pfam | PF13445 | RING-type zinc-finger | 263 | 309 | 5.3E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 255 | 315 | 3.26E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 364 | 8.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 263 | 311 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 28 | 191 | 15.499947 | IPR004331 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 263 | 312 | 11.869652 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 278 | 287 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38920.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related. | 0 |
| RefSeq | XP_037435952.1 | probable E3 ubiquitin-protein ligase BAH1-like 1 [Triticum dicoccoides] | 0 |
| A2XK56 | Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12825 PE=3 SV=1 | 0 | |
| TrEMBL | M7ZXQ2 | RING-type E3 ubiquitin transferase OS=Triticum urartu OX=4572 GN=TRIUR3_01992 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG054190.