Basic Information
Locus ID:
gene:TRIDC5AG054170
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Rhomboid family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 565077043 | 565082656 | + | gene:TRIDC5AG054170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 47,517.14 Da | 41.08 | 102.98 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14287 | UBA_At3g58460_like | 392 | 426 | 1.03197E-11 | - |
| Pfam | PF01694 | Rhomboid family | 60 | 242 | 4.6E-23 | IPR022764 |
| Pfam | PF00627 | UBA/TS-N domain | 392 | 425 | 8.1E-8 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 378 | 428 | 3.4E-11 | IPR009060 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 21 | 240 | 1.83E-26 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 16 | 242 | 3.7E-28 | IPR035952 |
| Gene3D | G3DSA:1.10.8.10 | - | 365 | 430 | 2.2E-18 | - |
| SMART | SM00165 | uba_6 | 390 | 427 | 3.9E-7 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 389 | 428 | 13.462584 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 342 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58460.1 | RHOMBOID-like protein 15. | 0 |
| RefSeq | XP_020155655.1 | rhomboid-like protein 15 isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q8LB17 | Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453LPH3 | UBA domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG054170.