Basic Information
Locus ID:
gene:TRIDC5AG052800
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 557664363 | 557671817 | + | gene:TRIDC5AG052800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 77,411.31 Da | 44.42 | 74.53 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 590 | 623 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 639 | 678 | 4.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 373 | 3.5E-9 | IPR001680 |
| Pfam | PF08145 | BOP1NT (NUC169) domain | 79 | 335 | 1.0E-99 | IPR012953 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 300 | 678 | 9.16E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 325 | 680 | 5.7E-141 | IPR015943 |
| SMART | SM01035 | BOP1NT_2 | 79 | 335 | 1.3E-129 | IPR012953 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 581 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 624 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 679 | 0.0095 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 342 | 379 | 12.947401 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 342 | 383 | 16.85791 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 361 | 375 | - | IPR019775 |
| Hamap | MF_03027 | Ribosome biogenesis protein @gn(BOP1) [BOP1]. | 2 | 679 | 42.105217 | IPR028598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 73 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40360.2 | - | 0 |
| RefSeq | XP_037435850.1 | ribosome biogenesis protein BOP1 homolog isoform X1 [Triticum dicoccoides] | 0 |
| Q0D6V7 | Ribosome biogenesis protein BOP1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=BOP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453LMF0 | Ribosome biogenesis protein BOP1 homolog OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG052800.