Basic Information
Locus ID:
gene:TRIDC5AG043980
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 498252844 | 498261669 | - | gene:TRIDC5AG043980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 78,615.49 Da | 59.42 | 52.21 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 162 | 443 | 1.14302E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 358 | 2.3E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 316 | 1.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 274 | 9.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 0.007 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 443 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 364 | 400 | 0.0025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 156 | 443 | 1.51E-74 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 482 | 1.9E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 328 | 2.3E-41 | IPR015943 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 3.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 401 | 1.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 7.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 190 | 0.0093 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 6.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 232 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 326 | 367 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 16.022453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 412 | 443 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 158 | 190 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 368 | 400 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 326 | 361 | 10.548323 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 232 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 321 | 11.945589 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 368 | 400 | 9.151057 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 412 | 443 | 9.467419 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 274 | 8.940149 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 303 | 317 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 710 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13480.3 | - | 0 |
| RefSeq | XP_037435187.1 | flowering time control protein FY-like [Triticum dicoccoides] | 0 |
| Q6NLV4 | Flowering time control protein FY OS=Arabidopsis thaliana OX=3702 GN=FY PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KM28 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG043980.