Basic Information
Locus ID:
gene:TRIDC5AG042370
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 485865532 | 485868721 | - | gene:TRIDC5AG042370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.09 | 23,312.23 Da | 74.67 | 68.29 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 155 | 192 | 2.1E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 199 | 3.74E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 209 | 4.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 155 | 192 | 5.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 155 | 193 | 12.784338 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 170 | 179 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 145 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.4 | - | 0 |
| RefSeq | XP_037435102.1 | E3 ubiquitin-protein ligase RNF4-like [Triticum dicoccoides] | 0 |
| Q9QZS2 | E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KID8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG042370.