Basic Information
Locus ID:
gene:TRIDC5AG038540
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 457492602 | 457504820 | - | gene:TRIDC5AG038540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 81,986.77 Da | 52.50 | 60.63 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 5 | 42 | 1.1E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 210 | 512 | 1.1E-47 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 4 | 45 | 5.06E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 206 | 517 | 3.53E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 1 | 47 | 2.7E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 203 | 524 | 2.3E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 5 | 42 | 11.360689 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 210 | 515 | 50.818012 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 5 | 42 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 211 | 226 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 568 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_044381676.1 | ubiquitin carboxyl-terminal hydrolase 17-like isoform X1 [Triticum aestivum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453L054 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG038540.