Basic Information
Locus ID:
gene:TRIDC5AG035940
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 437363823 | 437366601 | - | gene:TRIDC5AG035940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 38,953.36 Da | 50.79 | 69.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 224 | 272 | 5.1E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 346 | 9.81E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 91 | 6.1E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 221 | 277 | 1.8E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 219 | 8.83E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 269 | 347 | 1.1E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 221 | 3.8E-23 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 106 | 9.5E-7 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 344 | 0.82 | IPR001841 |
| SMART | SM00184 | ring_2 | 139 | 186 | 0.7 | IPR001841 |
| SMART | SM00184 | ring_2 | 34 | 80 | 0.36 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 282 | 344 | 0.072 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 208 | 272 | 3.6E-11 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 184 | 9.951762 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 79 | 8.845287 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 135 | 348 | 25.660778 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 157 | 166 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037431096.1 | E3 ubiquitin-protein ligase RNF14-like isoform X1 [Triticum dicoccoides] | 0 |
| F4ITM1 | E3 ubiquitin-protein ligase RSL1 OS=Arabidopsis thaliana OX=3702 GN=RSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KGF8 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG035940.