Basic Information
Locus ID:
gene:TRIDC5AG035850
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 437049078 | 437050792 | - | gene:TRIDC5AG035850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 16,342.59 Da | 64.39 | 85.20 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 76 | 149 | 3.52899E-52 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 76 | 147 | 3.3E-28 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 69 | 149 | 1.38E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 69 | 150 | 5.0E-35 | - |
| SMART | SM00213 | ubq_7 | 74 | 145 | 1.2E-27 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 74 | 149 | 26.59786 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 100 | 125 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 105 | 125 | 1.0E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 84 | 104 | 1.0E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 126 | 147 | 1.0E-23 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_002460225.1 | ubiquitin-NEDD8-like protein RUB1 [Sorghum bicolor] | 0 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811N7J0 | Ubiquitin-NEDD8-like protein RUB2 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS12990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG035850.