Basic Information
Locus ID:
gene:TRIDC5AG035840
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 437042774 | 437049505 | + | gene:TRIDC5AG035840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 70,535.01 Da | 52.41 | 90.42 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 207 | 460 | 1.3E-82 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 28 | 116 | 6.4E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 114 | 4.94E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 119 | 1.1E-10 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.620175 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 207 | 484 | 88.475052 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 637 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY family genes (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Encodes a protein with similarity to NHP3. Contains BTB/POZ domain. Promoter region has canonical auxin response element binding site and Wus binding site. Co-localizes to the late endosome with PID. Regulates cotyledon development through control of PIN1 polarity in concert with PID. Also involved in sepal and gynoecia development. | 0 |
| RefSeq | XP_037434583.1 | BTB/POZ domain-containing protein NPY1-like [Triticum dicoccoides] | 0 |
| Q8H1D3 | Phototropic-responsive NPH3 family protein NPY1 OS=Arabidopsis thaliana OX=3702 GN=NPY1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7UG85 | BTB/POZ domain-containing protein NPY1 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG035840.