Basic Information
Locus ID:
gene:TRIDC5AG033040
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Domain present in ubiquitin-regulatory proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 411596193 | 411599512 | + | gene:TRIDC5AG033040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 38,382.96 Da | 47.74 | 88.79 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09212 | PUB | 62 | 141 | 1.90704E-22 | - |
| Pfam | PF09409 | PUB domain | 63 | 128 | 5.2E-16 | IPR018997 |
| Pfam | PF00789 | UBX domain | 244 | 323 | 3.1E-5 | IPR001012 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 60 | 147 | 5.75E-18 | IPR036339 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 213 | 327 | 5.43E-13 | IPR029071 |
| Gene3D | G3DSA:1.20.58.2190 | - | 58 | 143 | 4.4E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 238 | 330 | 5.3E-9 | - |
| SMART | SM00580 | PGNneu | 62 | 126 | 9.4E-7 | - |
| SMART | SM00734 | c2hc_5 | 17 | 41 | 2.5E-4 | IPR006642 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 243 | 327 | 11.170569 | IPR001012 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01650.1 | plant UBX domain-containing protein 2. encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. | 0 |
| RefSeq | XP_037434391.1 | plant UBX domain-containing protein 2-like [Triticum dicoccoides] | 0 |
| Q9ZU93 | Plant UBX domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PUX2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KFT2 | UBX domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG033040.