Basic Information
Locus ID:
gene:TRIDC5AG032940
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 410639693 | 410644833 | - | gene:TRIDC5AG032940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 47,532.77 Da | 56.86 | 82.48 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 54 | 127 | 8.56064E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 318 | 374 | 3.3E-20 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 218 | 255 | 8.8E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 399 | 435 | 4.3E-9 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 57 | 129 | 3.4E-18 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 54 | 146 | 2.37E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 314 | 380 | 8.5E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 202 | 261 | 1.7E-10 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 382 | 442 | 6.61E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 392 | 439 | 7.2E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 307 | 374 | 1.2E-23 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 51 | 132 | 1.6E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 210 | 260 | 4.2E-20 | - |
| SMART | SM00165 | uba_6 | 400 | 437 | 3.8E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 217 | 257 | 1.8E-5 | IPR015940 |
| SMART | SM00727 | CBM | 316 | 359 | 1.0E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 54 | 128 | 6.8E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 54 | 442 | 2.0E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 398 | 438 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 54 | 132 | 20.478973 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 215 | 258 | 12.185437 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 344 | 366 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 410 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 411 | 425 | 3.5E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 426 | 441 | 3.5E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 293 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_037434382.1 | probable ubiquitin receptor RAD23 isoform X1 [Triticum dicoccoides] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KJ05 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG032940.