Basic Information
Locus ID:
gene:TRIDC5AG032470
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 404777039 | 404779350 | - | gene:TRIDC5AG032470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 57,587.84 Da | 61.47 | 85.01 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16453 | RING-Ubox | 58 | 86 | 2.30185E-11 | - |
| Pfam | PF04564 | U-box domain | 53 | 118 | 8.4E-13 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 283 | 322 | 3.5E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 213 | 450 | 9.87E-27 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 45 | 126 | 4.86E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 125 | 4.1E-16 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 211 | 515 | 5.3E-32 | IPR011989 |
| SMART | SM00185 | arm_5 | 282 | 324 | 0.044 | IPR000225 |
| SMART | SM00185 | arm_5 | 325 | 367 | 0.03 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 56 | 116 | 2.6E-10 | IPR003613 |
| SMART | SM00185 | arm_5 | 240 | 281 | 100.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 293 | 332 | 14.0174 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 336 | 380 | 9.5724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 52 | 123 | 15.968254 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65200.1 | plant U-box 38. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_037434338.1 | U-box domain-containing protein 39-like [Triticum dicoccoides] | 0 |
| Q9FJP6 | U-box domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=PUB38 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KI77 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG032470.