Basic Information
Locus ID:
gene:TRIDC5AG030720
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
PFU (PLAA family ubiquitin binding)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 389584388 | 389592432 | - | gene:TRIDC5AG030720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 83,900.13 Da | 41.77 | 83.68 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 25 | 308 | 1.79592E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 72 | 112 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 196 | 230 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 271 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 152 | 5.3E-5 | IPR001680 |
| Pfam | PF08268 | F-box associated domain | 607 | 685 | 2.9E-4 | IPR013187 |
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 192 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 275 | 308 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 28 | 59 | 0.094 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 23 | 324 | 1.17E-57 | IPR036322 |
| SUPERFAMILY | SSF81383 | F-box domain | 397 | 448 | 3.53E-6 | IPR036047 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 328 | 3.6E-70 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 231 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 60 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 153 | 4.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 192 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 271 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 112 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 309 | 5.7E-4 | IPR001680 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 490 | 679 | 5.2E-12 | IPR017451 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 240 | 271 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 240 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 29 | 59 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 192 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 240 | 271 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 152 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 121 | 9.739832 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 99 | 113 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 179 | 193 | 2.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 258 | 272 | 2.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 218 | 232 | 2.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18860.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_037434216.1 | uncharacterized protein LOC119301361 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A8R7UHV4 | FBA_3 domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG030720.