Basic Information
Locus ID:
gene:TRIDC5AG030670
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
ubiquitin-60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 388469617 | 388471343 | - | gene:TRIDC5AG030670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.60 | 15,432.65 Da | 45.07 | 87.86 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01020 | Ribosomal L40e family | 108 | 140 | 1.3E-14 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 22 | 92 | 6.0E-27 | IPR000626 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 106 | 140 | 1.56E-8 | IPR011332 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 13 | 96 | 3.94E-30 | IPR029071 |
| Gene3D | G3DSA:4.10.1060.50 | - | 108 | 140 | 5.3E-12 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 12 | 104 | 6.3E-39 | - |
| SMART | SM01377 | Ribosomal_L40e_3 | 107 | 140 | 3.0E-4 | IPR001975 |
| SMART | SM00213 | ubq_7 | 20 | 91 | 4.6E-29 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 20 | 95 | 25.247786 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 46 | 71 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 72 | 93 | 6.8E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 51 | 71 | 6.8E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 30 | 50 | 6.8E-29 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037434213.1 | ubiquitin-like [Triticum dicoccoides] | 0 |
| P51423 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6KGF6 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG030670.