Basic Information
Locus ID:
gene:TRIDC5AG030630
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
ubiquitin-60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 388380358 | 388383759 | + | gene:TRIDC5AG030630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 21,154.32 Da | 45.53 | 87.78 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 21 | 91 | 5.9E-27 | IPR000626 |
| Pfam | PF01020 | Ribosomal L40e family | 107 | 150 | 1.8E-22 | IPR001975 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 12 | 95 | 2.07E-30 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 105 | 152 | 5.86E-11 | IPR011332 |
| Gene3D | G3DSA:3.10.20.90 | - | 11 | 101 | 2.3E-39 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 107 | 153 | 7.2E-20 | IPR038587 |
| SMART | SM01377 | Ribosomal_L40e_3 | 106 | 157 | 4.2E-19 | IPR001975 |
| SMART | SM00213 | ubq_7 | 19 | 90 | 1.5E-29 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 19 | 94 | 25.770395 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 45 | 70 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 71 | 92 | 2.2E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 50 | 70 | 2.2E-29 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 29 | 49 | 2.2E-29 | IPR019956 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_037434210.1 | ubiquitin-like isoform X1 [Triticum dicoccoides] | 0 |
| B9DHA6 | Ubiquitin-ribosomal protein eL40z fusion protein OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7QC81 | Ubiquitin-like domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG030630.