Basic Information
Locus ID:
gene:TRIDC5AG029730
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
RCE1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 379998605 | 380002352 | - | gene:TRIDC5AG029730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 20,642.24 Da | 44.54 | 74.04 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 33 | 166 | 9.57187E-40 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 33 | 167 | 1.2E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 15 | 181 | 1.19E-48 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 25 | 183 | 3.5E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 32 | 174 | 1.0E-34 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 29 | 174 | 37.58252 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 101 | 116 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 0 |
| RefSeq | XP_037434144.1 | NEDD8-conjugating enzyme Ubc12-like [Triticum dicoccoides] | 0 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 0 | |
| TrEMBL | W5FUI8 | UBC core domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG029730.