Basic Information
Locus ID:
gene:TRIDC5AG029060
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 373324441 | 373333584 | + | gene:TRIDC5AG029060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 39,948.69 Da | 29.35 | 81.25 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 276 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 153 | 0.0032 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 72 | 106 | 8.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 326 | 5.72E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 207 | 3.2E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 208 | 332 | 3.6E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 196 | 234 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 67 | 106 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 113 | 153 | 3.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 318 | 18.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 120 | 158 | 11.391954 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 120 | 162 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 278 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 74 | 108 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 74 | 108 | 9.889235 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 140 | 154 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 93 | 107 | 5.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 5.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 140 | 154 | 5.9E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56130.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis. | 0 |
| RefSeq | XP_037434078.1 | THO complex subunit 3-like isoform X3 [Triticum dicoccoides] | 0 |
| Q9FKT5 | THO complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=THO3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453KKF7 | WD_REPEATS_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG029060.