Basic Information
Locus ID:
gene:TRIDC5AG026720
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Short Name:
VFB1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 341192237 | 341194227 | + | gene:TRIDC5AG026720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 55,818.07 Da | 49.20 | 100.08 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 49 | 79 | 8.1E-5 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 166 | 184 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 137 | 428 | 2.55E-36 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 87 | 6.54E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 102 | 442 | 2.1E-52 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 47 | 86 | 7.0E-11 | - |
| SMART | SM00367 | LRR_CC_2 | 337 | 361 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 138 | 163 | 1.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 164 | 188 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 336 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 362 | 387 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 388 | 412 | 5.2 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67250.1 | SKP1/ASK1-interacting protein 2. Encodes an SKP1 interacting partner (SKIP2).Encodes an F-box protein. Based on genetic analysis appears to be functionally redundant with VFB1,2, and 3. When expression of all 4 genes is reduced plants show defects in growth and reduced expression of auxin response genes. | 0 |
| RefSeq | XP_037433872.1 | F-box protein At1g47056-like [Triticum dicoccoides] | 0 |
| Q9FE83 | F-box protein SKIP2 OS=Arabidopsis thaliana OX=3702 GN=SKIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6KGQ7 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG026720.