Basic Information
Locus ID:
gene:TRIDC5AG025990
Species & Taxonomic ID:
Triticum dicoccoides & 85692
Genome Assembly:
GCF_002162155.2
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 5A | 332833801 | 332841191 | - | gene:TRIDC5AG025990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 122,557.68 Da | 50.01 | 58.76 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12438 | RRM_CNOT4 | 110 | 210 | 7.56537E-51 | IPR034261 |
| CDD | cd16618 | mRING-HC-C4C4_CNOT4 | 12 | 61 | 1.57153E-25 | IPR039515 |
| Pfam | PF14570 | RING/Ubox like zinc-binding domain | 12 | 64 | 1.3E-20 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 196 | 1.6E-4 | IPR000504 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 73 | 3.65E-14 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 109 | 196 | 2.13E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 116 | 198 | 4.9E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 80 | 4.7E-27 | IPR013083 |
| SMART | SM00361 | rrm2_1 | 116 | 198 | 1.4E-11 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 115 | 202 | 9.780305 | IPR000504 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 60 | 9.700961 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 479 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45630.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_037433837.1 | uncharacterized protein LOC119301037 [Triticum dicoccoides] | 0 |
| Q09818 | Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6KDZ3 | CCR4-NOT transcription complex subunit 4 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene:TRIDC5AG025990.